miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|6454894|gb|AW185504.1|AW185504 TGGAACCTGTGATGCAGTTGTATACAGAAGCAACTGATGGTTCTAATATTGAAGTTAAGGAGAGTGCTTTGGTGTGGCAT
CATCAAGATGCAGACCCTGATTTTGGTTCTTGCCAAGCCAAAGAATTGTTGGATCACTTGGAAAGTGTGCTTGCTAATGA
ACCAGCAGCTGTTACGAGAGGTCAGCATATTGTTGAAGTTAAGCCACCAGGAATAAGCAAGGGGTTGGTAGCTGAACAGG
TTCTTATGACCATGGTTAATGGCGGCAATCCACCAGATTTTGTGCTGTGCATTGGAGATGATAGGTCCGATGAGGACATG
TTTGAGAGCATTTTGAGGACAGTTTCGTGCCCATCATTACCATCAGCTCCAGAGATCTTTGCCTGCACTGTGGGTAGGAA
GCCTAGCAAGGCCAAGTATTTTCTTGATGATGCTTCTGATGTTGTGAAGTTGCTTCAGGGCCTTGCTGCTTCATCCAATC
CANAACCCAGGCATCTTGCTCATTCTCAAGTCTCTTTTGAGAGCACAGTT




Most similar to sp|Q9LRA7|TPS9_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9LRA7|TPS9_ARATH Probable alpha,alpha-trehalose-phosphate
            synthase [UDP-forming] 9 OS=Arabidopsis thaliana GN=TPS9
            PE=1 SV=1
          Length = 867

 Score =  265 bits (676), Expect = 2e-70
 Identities = 134/182 (73%), Positives = 148/182 (81%), Gaps = 6/182 (3%)
 Frame = +3

Query: 3    EPVMQLYTEATDGSNIEVKESALVWHHQDADPDFGSCQAKELLDHLESVLANEPAAVTRG 182
            EPVM+ Y +ATDGS IE KESALVWHHQDADPDFG+CQAKELLDHLESVLANEP  V RG
Sbjct: 686  EPVMRSYMDATDGSTIEYKESALVWHHQDADPDFGACQAKELLDHLESVLANEPVVVKRG 745

Query: 183  QHIVEVKPPGISKGLVAEQVLMTMVNGGNPPDFVLCIGDDRSDEDMFESILRTVSCPSLP 362
            QHIVEVKP G+SKGL  E+V+  MV  GNPPD V+CIGDDRSDEDMFESIL TV+ P LP
Sbjct: 746  QHIVEVKPQGVSKGLAVEKVIHQMVEDGNPPDMVMCIGDDRSDEDMFESILSTVTNPDLP 805

Query: 363  SAPEIFACTVGRKPSKAKYFLDDASDVVKLLQGLAA---SSNPXPRHLA---HSQVSFES 524
              PEIFACTVGRKPSKAKYFLDD SDV+KLL GLAA   SS P  +  +   H+QV+FES
Sbjct: 806  MPPEIFACTVGRKPSKAKYFLDDVSDVLKLLGGLAAATSSSKPEYQQQSSSLHTQVAFES 865

Query: 525  TV 530
             +
Sbjct: 866  II 867